Fred Hutchinson Cancer Center
Enhancing Reproducible Science with GitHub and Docker Specialization

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Fred Hutchinson Cancer Center

Enhancing Reproducible Science with GitHub and Docker Specialization

Make Your Scientific Data Analysis Reproducible. Learn best practices, methods, and tools to enhance the reproducibility of your data analyses

Carrie Wright, PhD
Kate Isaac
Candace Savonen, MS

Instructors: Carrie Wright, PhD

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Get in-depth knowledge of a subject
Beginner level

Recommended experience

1 month
at 10 hours a week
Flexible schedule
Learn at your own pace
Get in-depth knowledge of a subject
Beginner level

Recommended experience

1 month
at 10 hours a week
Flexible schedule
Learn at your own pace

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Advance your subject-matter expertise

  • Learn in-demand skills from university and industry experts
  • Master a subject or tool with hands-on projects
  • Develop a deep understanding of key concepts
  • Earn a career certificate from Fred Hutchinson Cancer Center

Specialization - 4 course series

What you'll learn

  • Create reproducible data analyses

  • Apply reproducibility skills to existing analyses scripts and projects

Skills you'll gain

Category: Git (Version Control System)
Category: Package and Software Management
Category: GitHub
Category: Code Review
Category: Open Source Technology
Category: Programming Principles
Category: Technical Documentation
Category: Integrated Development Environments
Category: Jupyter
Category: Data Analysis
Category: Rmarkdown
Category: R Programming
Category: Bioinformatics
Category: Scientific Methods

What you'll learn

  • Enhance reproducibility and replicability of data analyses

  • Introduction to reproducibility tools

Skills you'll gain

Category: Code Review
Category: Docker (Software)
Category: GitHub
Category: Containerization
Category: Automation
Category: Git (Version Control System)
Category: Technical Communication
Category: Software Development Tools
Category: Data Analysis
Category: Version Control
Category: Science and Research
Category: Health Informatics
Category: Bioinformatics
Category: Medical Science and Research
Category: R Programming

What you'll learn

  • Goal of this course: Equip learners with basics skills and confidence to utilize containers within the context of scientific software analyses.

Skills you'll gain

Category: Docker (Software)
Category: Containerization
Category: CI/CD
Category: Command-Line Interface
Category: Software Installation
Category: Continuous Integration
Category: GitHub
Category: Software Versioning
Category: Continuous Deployment
Category: Development Environment
Category: Software Development
Category: Debugging
Category: Devops Tools
Category: Application Deployment

What you'll learn

  • Utilize automation to enhance scientific projects and save time

    Troubleshoot most common GitHub Actions errors

Skills you'll gain

Category: Automation
Category: GitHub
Category: Continuous Integration
Category: CI/CD
Category: Science and Research
Category: YAML
Category: Continuous Deployment
Category: Docker (Software)
Category: Software Development
Category: Bioinformatics
Category: Debugging
Category: Test Automation
Category: Development Environment
Category: Scientific Methods

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Instructors

Carrie Wright, PhD
Fred Hutchinson Cancer Center
13 Courses16,716 learners

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